Package: frair 0.5.100
frair: Tools for Functional Response Analysis
Tools to support sensible statistics for functional response analysis.
Authors:
frair_0.5.100.tar.gz
frair_0.5.100.zip(r-4.5)frair_0.5.100.zip(r-4.4)frair_0.5.100.zip(r-4.3)
frair_0.5.100.tgz(r-4.4-any)frair_0.5.100.tgz(r-4.3-any)
frair_0.5.100.tar.gz(r-4.5-noble)frair_0.5.100.tar.gz(r-4.4-noble)
frair_0.5.100.tgz(r-4.4-emscripten)frair_0.5.100.tgz(r-4.3-emscripten)
frair.pdf |frair.html✨
frair/json (API)
| # Install 'frair' in R: |
| install.packages('frair', repos = c('https://dpritchard.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dpritchard/frair/issues
- bythotrephes - Bythotrephes Functional Response Data
- gammarus - Gammarus Functional Response Data
Last updated 8 years agofrom:a66a1733bc. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win | NOTE | Oct 25 2024 |
| R-4.5-linux | NOTE | Oct 25 2024 |
| R-4.4-win | OK | Oct 25 2024 |
| R-4.4-mac | OK | Oct 25 2024 |
| R-4.3-win | OK | Oct 25 2024 |
| R-4.3-mac | OK | Oct 25 2024 |
Exports:bdIIbdII_diffbdII_fitbdII_nllbdII_nll_diffdrawpolydrawpoly.defaultemdIIemdII_diffemdII_fitemdII_nllemdII_nll_diffflexpflexp_diffflexp_fitflexp_nllflexp_nll_diffflexpnrflexpnr_diffflexpnr_fitflexpnr_nllflexpnr_nll_difffrair_bootfrair_comparefrair_fitfrair_responsesfrair_testhassIIIhassIII_diffhassIII_fithassIII_nllhassIII_nll_diffhassIIInrhassIIInr_diffhassIIInr_fithassIIInr_nllhassIIInr_nll_diffhassIIIrhassIIIr_diffhassIIIr_fithassIIIr_nllhassIIIr_nll_diffhollingsIIhollingsII_diffhollingsII_fithollingsII_nllhollingsII_nll_diffreal77real77_diffreal77_fitreal77_nllreal77_nll_diffreal77rreal77r_diffreal77r_fitreal77r_nllreal77r_nll_diffrogersIIrogersII_diffrogersII_fitrogersII_nllrogersII_nll_difftypeItypeI_difftypeI_fittypeI_nlltypeI_nll_diff
Dependencies:bbmlebdsmatrixbootlamWlatticeMASSMatrixmvtnormnumDerivRcppRcppParallel
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Functional Response Analysis in R | frair-package frair |
| Bythotrephes Functional Response Data | bythotrephes |
| Draw polygons | drawpoly drawpoly.default |
| EMD Type II Response | emdII emdII_fit emdII_nll fr_emdII |
| Scaling Exponent Response, assuming replacement | flexp flexp_fit flexp_nll fr_flexp |
| Scaling Exponent Response, not assuming replacement | flexpnr flexpnr_fit flexpnr_nll fr_flexpnr |
| Hassell's Type III Response | fr_hassIII hassIII hassIII_fit hassIII_nll |
| Hassell's Type III Response, without replacement | fr_hassIIInr hassIIInr hassIIInr_fit hassIIInr_nll |
| Holling's Original Type II Response | fr_hollingsII hollingsII hollingsII_fit hollingsII_nll |
| Rogers' Type II Response | fr_rogersII rogersII rogersII_fit rogersII_nll |
| Type I Response | fr_typeI typeI typeI_fit typeI_nll |
| Bootstrap a predator-prey functional response. | frair_boot |
| frair methods | confint.frboot drawpoly.frboot frair_boot_methods lines.frboot plot.frboot print.frboot print.frconf |
| Test the difference between two functional response fits | emdII_diff emdII_nll_diff flexpnr_diff flexpnr_nll_diff flexp_diff flexp_nll_diff frair_compare hassIIInr_diff hassIIInr_nll_diff hassIII_diff hassIII_nll_diff hollingsII_diff hollingsII_nll_diff rogersII_diff rogersII_nll_diff typeI_diff typeI_nll_diff |
| Fit predator-prey functional responses. | frair_fit |
| frair methods | frair_fit_methods lines.frfit plot.frfit print.frfit |
| FRAIR responses | frair_responses |
| Test for evidence of type-II or type-III functional responses | frair_test print.frtest |
| Deprecated Functional Response Models | bdII bdII_diff bdII_fit bdII_nll bdII_nll_diff frair-deprecated fr_bdII fr_hassIIIr fr_real77 fr_real77r hassIIIr hassIIIr_diff hassIIIr_fit hassIIIr_nll hassIIIr_nll_diff real77 real77r real77r_diff real77r_fit real77r_nll real77r_nll_diff real77_diff real77_fit real77_nll real77_nll_diff |
| Gammarus Functional Response Data | gammarus |
